05.03.2025 – 4.30 pm CET

APMA SS 2025 Journal club will restart in March!

Join us for the organizational meeting on the 5th of March at our regular time: 16:30.

Speaker: tba

Paper: tba

Or join manually:

Meeting ID: 682 7590 7309
Password: S9JaJDbe

The APMA Journal Club is a classical journal club where we will discuss one key paper from the fields of mass spectrometry, proteomics, metabolomics, or bioinformatics per week.

This Journal Club is held online. Therefore, everyone is invited to join!

It is hosted through an online meeting system. We will use an recurring Zoom link (see above)!

The APMA Journal Club is an official journal club in the Ph.D. program of the Medical University of Vienna, Technical University of Vienna, University of Vienna and University of Innsbruck . If you are there, you can book the course to get credits for it. One paper presentation and attendance for at least 50% of the meetings is required!

However, everyone is welcome to join the meeting through the link posted at the top of the page.

  • In chronological order:
    • 04.12.2024
      • Speaker: Lea Emmy Timpen (MedUni Innsbruck)
      • Paper:  Wen, X., Wang, J., Zhang, D. et al. Reverse Chromatin Immunoprecipitation (R-ChIP) enables investigation of the upstream regulators of plant genes. Commun Biol 3, 770 (2020). https://doi.org/10.1038/s42003-020-01500-4
    • 27.11.2024
      • Speaker: Antonio Brancaccio (Uni Wien)
      • Paper:  Muller M, de Villiers A. A detailed evaluation of the advantages and limitations of online RP-LC×HILIC compared to HILIC×RP-LC for phenolic analysis. J Chromatogr A. 2023 Mar 15;1692:463843. doi: 10.1016/j.chroma.2023.463843.
    • 06.11.2024
      • Speaker: Tereza Kubatova (Uni Wien)
      • Paper:  Qiao, Z., Nie, W., Vahdat, A. et al. State-specific protein–ligand complex structure prediction with a multiscale deep generative model. Nat Mach Intell 6, 195–208 (2024). https://doi.org/10.1038/s42256-024-00792-z
    • 30.10.2024
      • Speaker: Martina Höllwarth (MedUni Innsbruck)
      • Paper:  Runa D. Hoenger Ramazanova, Theodoros I. Roumeliotis, James C. Wright, and Jyoti S. Choudhary, PhoXplex: Combining Phospho-enrichable Cross-Linking with Isobaric Labeling for Quantitative Proteome-Wide Mapping of Protein Interfaces, 2024, Journal of Proteome Research Article , https://doi.org/10.1021/acs.jproteome.4c00567
    • 23.10.2024
      • Speaker: Amirreza Dowlati Beirami (Uni Wien)
      • Paper:  Wang, Z., Zhang, D., Wu, J. et al. Illuminating the dark space of neutral glycosphingolipidome by selective enrichment and profiling at multi-structural levels. Nat Commun 15, 5627 (2024). https://doi.org/10.1038/s41467-024-50014-8
    • 16.10.2024
      • Speaker: Verena Schwarzmann (Uni Wien)
      • Paper:  Oleksandr Kozlov, Eliška Hančová, Eva Cífková, and Miroslav Lísa, Comprehensive Single-Platform Lipidomic/Metabolomic Analysis Using Supercritical Fluid Chromatography–Mass Spectrometry, Analytical Chemistry 2024 96 (3), 1320-1327, DOI: 10.1021/acs.analchem.3c04771
    • 09.10.2024
      • Speaker: Lukas Schmidt (MedUni Wien)
      • Paper: Serrano, Lia R. et al. The One Hour Human Proteome, Molecular & Cellular Proteomics, 2024, 23, 5, 100760, doi: 10.1016/j.mcpro.2024.100760
    • 12.06.2024
      • Speaker: Hoang Anh Nguyenová (Uni Wien)
      • Paper: Dekker, P.M., Boeren, S., Saccenti, E. et al. Network analysis of the proteome and peptidome sheds light on human milk as a biological system. Sci Rep 14, 7569 (2024). https://doi.org/10.1038/s41598-024-58127-2
    • 05.05.2024
      • Speaker: Lukas Schmidt (MedUni Wien)
      • Paper: Mary R Rooney, Jingsha Chen, Christie M Ballantyne, et al. Comparison of Proteomic Measurements Across Platforms in the Atherosclerosis Risk in Communities (ARIC) Study, Clinical Chemistry, 69, 1, (2023). https://doi.org/10.1093/clinchem/hvac186

    More previous meetings can be found in the APMA Journal Club Archive!

    In case you have more questions about the APMA Journal Club don’t hesitate to contact us at office [at] apma [dot] at.

    All registered students may also contact the corresponding lecturers of each university.