Next Meeting Details

10.12.2025 – 4.30 pm CET

Next appointment: 10.12.2025

APMA WS 2025 Journal club

Join Meeting

Speaker:  Sarah Reindl

Paper: Zanon, P.R.A., Yu, F., Musacchio, P.Z. et al. Profiling the proteome-wide selectivity of diverse electrophiles. Nat. Chem. 17, 1712–1721 (2025). https://doi.org/10.1038/s41557-025-01902-z

Or join manually:

Meeting ID: 650 0807 8361

Passcode: 645641

What?

The APMA Journal Club is a classical journal club where we will discuss one key paper from the fields of mass spectrometry, proteomics, metabolomics, or bioinformatics per week.

This Journal Club is held online. Therefore, everyone is invited to join!

Where?

It is hosted through an online meeting system. We will use an recurring Zoom link (see above)!

The APMA Journal Club is an official journal club in the Ph.D. program of the Medical University of Vienna, Technical University of Vienna, University of Vienna and University of Innsbruck . If you are there, you can book the course to get credits for it. One paper presentation and attendance for at least 50% of the meetings is required!

However, everyone is welcome to join the meeting through the link posted at the top of the page.

Previous Meetings

In chronological order:

  • 03.12.2025
    • Speaker:  Amirreza Dowlati Beirami
    • Paper: Takashi Baba, Ashish Pradhan, Derrick Rytwinski, Eva Duchoslav, Pavel Ryumin, Paul R. S. Baker, Jose Castro-Perez, Multistage Tandem Mass Spectrometry Using an Electron-Activated Dissociation Device with a Linear Ion Trap and Structural Identification of Cardiolipins, Analytical Chemistry, 2025, ASAP . https://doi.org/10.1021/acs.analchem.5c05400
  • 26.11.2025
    • Speaker:  Matthias Hadrbolec
    • Paper: Ninck, S., Klaus, T., Kochetkova, T.V. et al. Environmental activity-based protein profiling for function-driven enzyme discovery from natural communities. Environmental Microbiome 19, 36 (2024). https://doi.org/10.1186/s40793-024-00577-2
  • 12.11.2025
    • Speaker:  Thi Duong (TU Vienna)
    • Paper: Xiaoxiao Huang, Xin Wang, Victoria C. Cotham, David Bramhall, Jieqiang Zhong, Yimeng Zhao, Haibo Qiu, Shunhai Wang, and Ning Li, Development of a Novel Label-Free Subunit HILIC-MS Method for Domain-Specific Free Thiol Identification and Quantitation in Therapeutic Monoclonal Antibodies, Journal of the American Society for Mass Spectrometry 2024 35 (12), 3019-3027 https://doi.org/10.1021/jasms.4c00308
  • 5.11.2025
    • Speaker: Maya Petek (University of Maribor, Slowenia)
    • Paper: Kardell O, Gronauer T, von Toerne C, Merl-Pham J, König AC, Barth TK, Mergner J, Ludwig C, Tüshaus J, Giesbertz P, Breimann S, Schweizer L, Müller T, Kliewer G, Distler U, Gomez-Zepeda D, Popp O, Qin D, Teupser D, Cox J, Imhof A, Küster B, Lichtenthaler SF, Krijgsveld J, Tenzer S, Mertins P, Coscia F, Hauck SM. Multicenter Longitudinal Quality Assessment of MS-Based Proteomics in Plasma and Serum. J Proteome Res. 2025 Mar 7;24(3):1017-1029. doi: 10.1021/acs.jproteome.4c00644
  • 7.5.2024
    • Speaker: El Mehdi Raoui (University of Vienna)
    • Paper: Qingguan Li, Li Tan, Pengzhi Hong, Huanming Liu, Chunxia Zhou, Tilapia-soybean protein co-precipitates: Focus on physicochemical properties, nutritional quality, and proteomics profile, Food ChemistrX, 2024 , 21,  101179 https://doi.org/10.1016/j.fochx.2024.101179
  • 30.4.2025
    • Speaker: Viktoria Beer (IMC Krems)
    • Paper: Péter Sándor, Károly Vékey, László Drahos, and Ágnes Révész, The Enzyme Effect: Broadening the Horizon of MS Optimization to Nontryptic Digestion in ProteomicsKinga Nagy, Journal of the American Society for Mass Spectrometry 2025 36 (2), 299-308 DOI: 10.1021/jasms.4c00396
  • 9.4.2025
    • Speaker: Sarah Reindl (TU Wien)
    • Paper: Jiang, J., Czuchry, D., Ru, Y. et al. Activity-based metaproteomics driven discovery and enzymological characterization of potential α-galactosidases in the mouse gut microbiome. Commun Chem 7, 184 (2024). https://doi.org/10.1038/s42004-024-01273-5
  • 26.3.2025
    • Speaker: Lukas Schmidt (MedUni Wien)
    • Paper:  Van Puyvelde, B., Hunter, C.L., Zhgamadze, M. et al. Acoustic ejection mass spectrometry empowers ultra-fast protein biomarker quantification. Nat Commun 15, 5114 (2024). https://doi.org/10.1038/s41467-024-48563-z
  • 04.12.2024
    • Speaker: Lea Emmy Timpen (MedUni Innsbruck)
    • Paper:  Wen, X., Wang, J., Zhang, D. et al. Reverse Chromatin Immunoprecipitation (R-ChIP) enables investigation of the upstream regulators of plant genes. Commun Biol 3, 770 (2020). https://doi.org/10.1038/s42003-020-01500-4
  • 27.11.2024
    • Speaker: Antonio Brancaccio (Uni Wien)
    • Paper:  Muller M, de Villiers A. A detailed evaluation of the advantages and limitations of online RP-LC×HILIC compared to HILIC×RP-LC for phenolic analysis. J Chromatogr A. 2023 Mar 15;1692:463843. doi: 10.1016/j.chroma.2023.463843.
  • 06.11.2024
    • Speaker: Tereza Kubatova (Uni Wien)
    • Paper:  Qiao, Z., Nie, W., Vahdat, A. et al. State-specific protein–ligand complex structure prediction with a multiscale deep generative model. Nat Mach Intell 6, 195–208 (2024). https://doi.org/10.1038/s42256-024-00792-z
  • 30.10.2024
    • Speaker: Martina Höllwarth (MedUni Innsbruck)
    • Paper:  Runa D. Hoenger Ramazanova, Theodoros I. Roumeliotis, James C. Wright, and Jyoti S. Choudhary, PhoXplex: Combining Phospho-enrichable Cross-Linking with Isobaric Labeling for Quantitative Proteome-Wide Mapping of Protein Interfaces, 2024, Journal of Proteome Research Article , https://doi.org/10.1021/acs.jproteome.4c00567
  • 23.10.2024
    • Speaker: Amirreza Dowlati Beirami (Uni Wien)
    • Paper:  Wang, Z., Zhang, D., Wu, J. et al. Illuminating the dark space of neutral glycosphingolipidome by selective enrichment and profiling at multi-structural levels. Nat Commun 15, 5627 (2024). https://doi.org/10.1038/s41467-024-50014-8
  • 16.10.2024
    • Speaker: Verena Schwarzmann (Uni Wien)
    • Paper:  Oleksandr Kozlov, Eliška Hančová, Eva Cífková, and Miroslav Lísa, Comprehensive Single-Platform Lipidomic/Metabolomic Analysis Using Supercritical Fluid Chromatography–Mass Spectrometry, Analytical Chemistry 2024 96 (3), 1320-1327, DOI: 10.1021/acs.analchem.3c04771
  • 09.10.2024
    • Speaker: Lukas Schmidt (MedUni Wien)
    • Paper: Serrano, Lia R. et al. The One Hour Human Proteome, Molecular & Cellular Proteomics, 2024, 23, 5, 100760, doi: 10.1016/j.mcpro.2024.100760
  • 12.06.2024
    • Speaker: Hoang Anh Nguyenová (Uni Wien)
    • Paper: Dekker, P.M., Boeren, S., Saccenti, E. et al. Network analysis of the proteome and peptidome sheds light on human milk as a biological system. Sci Rep 14, 7569 (2024). https://doi.org/10.1038/s41598-024-58127-2
  • 05.05.2024
    • Speaker: Lukas Schmidt (MedUni Wien)
    • Paper: Mary R Rooney, Jingsha Chen, Christie M Ballantyne, et al. Comparison of Proteomic Measurements Across Platforms in the Atherosclerosis Risk in Communities (ARIC) Study, Clinical Chemistry, 69, 1, (2023). https://doi.org/10.1093/clinchem/hvac186

More previous meetings can be found in the APMA Journal Club Archive!

More Questions?

In case you have more questions about the APMA Journal Club don’t hesitate to contact us at office [at] apma [dot] at.

All registered students may also contact the corresponding lecturers of each university.